AWS ElasticBeanstalk update without modifying Django wsgi.conf

I have a django app deployed in AWS EB using autoscaling. This app uses Django Rest with Token Authentication. In order for this to work, I have to add the following lines in etc/httpd/conf.d/wsgi.conf file:

RewriteEngine on  RewriteCond %{HTTP:Authorization} ^(.*)  RewriteRule .* - [e=HTTP_AUTHORIZATION:%1]    WSGIPassAuthorization On

The problem is: when AWS do an autoscale or ElasticBeanstalk environment upgrade, the wsgi.conf file is updated and the custom settings are deleted.

How can I avoid that?

Thanks in advance

Stackoverflow thread: http://stackoverflow.com/questions/39168351/aws-elasticbeanstalk-update-without-modifing-django-wsgi-conf

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